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Ligand · 0NI

0NI · Aurachin D

0NI, Aurachin D (C25 H33 N O, 363.6 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
0NI
Formula
C25 H33 N O
Class
ligand
Structures
3
PDB entries
2

Binding sites

0NI in 3 structures; the first of them:

  • 7XK6 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, with… · 0NI B602 · binds TRP337, LEU26, ALA29, ALA30, LEU33, LYS54, MET57, ILE58 and 10 more
  • 7OSE · Cytochrome bd-II type oxidase with bound aurachin D · 0NI A604 · binds ASP239, ALA242, GLU257, PHE269, LEU291, LEU295, PHE390, ARG391 and 1 more
  • 7XK6 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · 0NI B602 · binds TRP337, LEU33, LYS54, MET57, GLY141, GLU144, VAL155, ASN156 and 4 more

Residues it binds most

PHE 4, LEU 4, GLU 4, VAL 4, ALA 3, GLY 2, ARG 2, ASN 2, ASP 2, LYS 2 (residue and the binding sites it lines).

Found with

  • FAD · Flavin-adenine dinucleotide
  • FES · Fe2/s2 (inorganic) cluster
  • FMN · Flavin mononucleotide
  • PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine
  • RBF · Riboflavin
  • CA · Calcium ion
  • LMT · Dodecyl-beta-D-maltoside
  • HDD · Cis-heme D hydroxychlorin gamma-spirolactone
  • HEB · Heme B/C
  • UQ8 · Ubiquinone-8

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