GL1X · GenesisL1 explorer

MolNFT v2 · #98600 · protein

FAD-linked sulfhydryl oxidase ALR mutation

4LDK: “FAD-linked sulfhydryl oxidase ALR mutation”. X-ray diffraction at 2.04, 2 ligands (FAD, NA), 1 pocket (best druggability 0.63). MolNFT v2 #98600 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
4LDK
Type
protein
Length
115 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.04
Source
Homo sapiens
Molecule
FAD-linked sulfhydryl oxidase ALR
EC
1.8.3.2
UniProt
P55789
Ligands
FAD, NA
Pockets
1 · best druggability 0.63

Structure

x-ray diffraction · resolution 2.04 · 1 distinct chain · 65% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AFAD-linked sulfhydryl oxidase ALR (EC 1.8.3.2)protein11565% helix, 0% strandP55789

Ligands and binding sites

  • FAD · Flavin-adenine dinucleotide · ligand · chains A
  • NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12140.630.8230FAD, NA

Modifications

Observed in the structure: 1 disulfide, 1 modified (disulfide, oxidation).

Compared structures

  • 4LDK · FAD-linked sulfhydryl oxidase alr mutation · the same entry in another collection · chain A against A, TM-score 1.00
  • P55789 · AlphaFold monomer V2.0 prediction for FAD-linked sulfhydryl oxidase alr (P55789) · a predicted model of the same protein · chain A against A, TM-score 0.99

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