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MolNFT v2 · #46279 · protein + DNA

Nucleosome core particle containing 145 bp of DNA

2NZD: “Nucleosome core particle containing 145 bp of DNA”. X-ray diffraction at 2.65. MolNFT v2 #46279 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
2NZD
Type
protein + DNA
Length
1,055 residues
Chains
10
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.65
Source
Xenopus laevis; SYNTHETIC CONSTRUCT
UniProt
P62799, Q6AZJ8, P02281

Structure

x-ray diffraction · resolution 2.65 · 7 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
I—dna145——
J—dna145——
A, E—protein97——
B—protein82—P62799
C, G—protein106—Q6AZJ8
D, H—protein95—P02281
F—protein87—P62799

Compared structures

  • 2NZD · Nucleosome core particle containing 145 bp of DNA · the same entry in another collection · chain J against J, TM-score 1.00
  • P62799 · AlphaFold monomer V2.0 prediction for histone H4 (P62799) · a predicted model of the same protein · chain F against A, TM-score 0.97

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