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MolNFT v2 · #46057 · protein

Crystal structure of the C2 domain of the human E3 ubiquitin-protein ligase NEDD4-like protein

2NSQ: “Crystal structure of the C2 domain of the human E3 ubiquitin-protein ligase NEDD4-like protein”. X-ray diffraction at 1.85. MolNFT v2 #46057 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
2NSQ
Type
protein
Length
140 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.85
Source
Homo sapiens
Molecule
E3 ubiquitin-protein ligase NEDD4-like protein
EC
6.3.2.-
UniProt
Q96PU5

Structure

x-ray diffraction · resolution 1.85 · 1 distinct chain · 0% helix, 51% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AE3 ubiquitin-protein ligase NEDD4-like protein (EC 6.3.2.-)protein1400% helix, 51% strandQ96PU5

Ligands and binding sites

  • EDO · 1,2-ethanediol · additive · chains A
  • GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 2NSQ · Crystal structure of the C2 domain of the human E3 ubiquitin-protein ligase NEDD4-like… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q96PU5 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase NEDD4-like (Q96PU5) · a predicted model of the same protein · chain A against A, TM-score 0.94

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