MolNFT v2 · #25493 · DNA
Unusual helical packing in crystals of DNA bearing a mutation hot spot
1VTD · DNA (5'-D(*AP*CP*CP*GP*GP*CP*GP*CP*CP*AP*CP*A)-3'): “Unusual helical packing in crystals of DNA bearing a mutation hot spot”. X-ray diffraction at 2.8. MolNFT v2 #25493 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1VTD
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.8
- Molecule
- DNA (5'-D(*AP*CP*CP*GP*GP*CP*GP*CP*CP*AP*CP*A)-3'); DNA…
Structure
x-ray diffraction · resolution 2.8 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*AP*CP*CP*GP*GP*CP*GP*CP*CP*AP*CP*A)-3') | dna | 12 | — | — |
| B | DNA (5'-D(*TP*GP*TP*GP*GP*CP*GP*CP*CP*GP*GP*T)-3') | dna | 12 | — | — |
Interfaces
1 interface between chains.
- A–B · 527 Ų buried · 44 hydrogen bonds · nucleic-nucleic
Compared structures
- 1VTD · Unusual helical packing in crystals of DNA bearing a mutation hot spot · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1VTD · PDBe 1VTD
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