MolNFT v2 · #223108 · RNA
oppF ROSE-like RNA thermometer structure
8VFS · RNA (27-mer): “oppF ROSE-like RNA thermometer structure”. X-ray diffraction at 2.7, 2 pockets (best druggability 0.63). MolNFT v2 #223108 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8VFS
- Type
- RNA
- Length
- 54 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.7
- Molecule
- RNA (27-mer)
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · resolution 2.7 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA (27-mer) | rna | 27 | — | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 474 | 0.63 | 0.77 | 27 | empty |
| 2 | 295 | 0.48 | 0.73 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1331 Ų buried · 120 hydrogen bonds · nucleic-nucleic
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 8VFS · PDBe 8VFS
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