Research workbench

oppF ROSE-like RNA thermometer structure

Analyse oppF ROSE-like RNA thermometer structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 8VFS
Type: RNA
Length: 54 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.7
Molecule: RNA (27-mer)
Pockets: 2 · best druggability 0.63

Structure

x-ray diffraction · resolution 2.7 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	RNA (27-mer)	rna	27	—	—

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	474	0.63	0.77	27	empty
2	295	0.48	0.73	20	empty

Interfaces

1 interface between chains.

A–B · 1331 Å² buried · 120 hydrogen bonds · nucleic-nucleic

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 8VFS · PDBe 8VFS

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.