MolNFT v2 · #220607 · protein
SOS2 crystal structure with fragment bound (compound 14)
8T5M · Son of sevenless homolog 2: “SOS2 crystal structure with fragment bound (compound 14)”. X-ray diffraction at 1.79, 2 ligands (YIF, SO4), 5 pockets (best druggability 0.43). MolNFT v2 #220607 on GenesisL1: 3D structure, binding sites…
- PDB
- 8T5M
- Type
- protein
- Length
- 463 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.79
- Source
- Homo sapiens
- Molecule
- Son of sevenless homolog 2
- UniProt
- Q07890
- Ligands
- YIF, SO4
- Pockets
- 5 · best druggability 0.43
Structure
x-ray diffraction · resolution 1.79 · 1 distinct chain · 59% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Son of sevenless homolog 2 | protein | 463 | 59% helix, 3% strand | Q07890 |
Ligands and binding sites
- YIF · 4-[(1R,2S)-1-hydroxy-2-{[2-(4-hydroxyphenyl)ethyl]amino}propyl]phenol · ligand · chains A
- SO4 · Sulfate ion · ion · 4 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.43 | 0.77 | 22 | empty |
| 2 | 120 | 0.40 | 0.75 | 23 | empty |
| 3 | 70 | 0.40 | 0.79 | 14 | empty |
| 4 | 102 | 0.38 | 0.75 | 20 | empty |
| 5 | 53 | 0.31 | 0.76 | 14 | empty |
Compared structures
- Q07890 · AlphaFold monomer V2.0 prediction for son of sevenless homolog 2 (Q07890) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q07890
- Elsewhere: RCSB PDB 8T5M · PDBe 8T5M · UniProt Q07890
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