MolNFT v2 · #218701 · protein
Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 822 fs time delay
8R9J: “Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 822 fs time delay”. X-ray diffraction at 1.4, 3 ligands (HEM, SO4, CMO), 1 pocket (best druggability 0.71). MolNFT v2 #218701 on GenesisL1: 3D…
- PDB
- 8R9J
- Type
- protein
- Length
- 152 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.4
- Source
- Equus caballus
- Molecule
- Myoglobin
- UniProt
- P68082
- Ligands
- HEM, SO4, CMO
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · resolution 1.4 · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myoglobin | protein | 152 | 77% helix, 0% strand | P68082 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- CMO · Carbon monoxide · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 239 | 0.71 | 0.86 | 29 | HEM, CMO |
Compared structures
- P68082 · AlphaFold monomer V2.0 prediction for myoglobin (P68082) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68082
- Elsewhere: RCSB PDB 8R9J · PDBe 8R9J · UniProt P68082
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