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Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser fluence, 822 fs time delay

Analyse Multicopy-refined carboxymyoglobin photolysis time series at 23 mJ/cm2 laser… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 8R9J
Type: protein
Length: 152 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.4
Source: Equus caballus
Molecule: Myoglobin
UniProt: P68082
Ligands: HEM, SO4, CMO
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · resolution 1.4 · 1 distinct chain · 77% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Myoglobin	protein	152	77% helix, 0% strand	P68082

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
CMO · Carbon monoxide · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	239	0.71	0.86	29	HEM, CMO

Compared structures

P68082 · AlphaFold monomer V2.0 prediction for myoglobin (P68082) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P68082
Elsewhere: RCSB PDB 8R9J · PDBe 8R9J · UniProt P68082

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