MolNFT v2 · #202493 · protein
JC Polyomavirus VP1 in complex with 6'-Sialyllactose glycomacromolecules (aromatic linker)
7ZIO: “JC Polyomavirus VP1 in complex with 6'-Sialyllactose glycomacromolecules (aromatic linker)”. X-ray diffraction at 1.751, 4 ligands (GAL, SIA, BGC). MolNFT v2 #202493 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7ZIO
- Type
- protein
- Length
- 1,297 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.751
- Source
- JC polyomavirus
- UniProt
- P03089
- Ligands
- GAL, SIA, BGC, CL
Structure
x-ray diffraction · resolution 1.751 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| AAA | — | protein | 257 | — | P03089 |
| BBB | — | protein | 256 | — | P03089 |
| CCC, DDD | — | protein | 263 | — | P03089 |
| EEE | — | protein | 258 | — | P03089 |
Ligands and binding sites
- GAL · beta-D-galactopyranose · sugar · 3 copies
- SIA · N-acetyl-alpha-neuraminic acid · sugar · 3 copies · chains BBB, CCC, DDD, EEE
- BGC · beta-D-glucopyranose · sugar · 2 copies
- CL · Chloride ion · ion · chains EEE
- EDO · 1,2-ethanediol · additive · 9 copies · chains AAA, BBB, CCC, DDD, EEE
- GOL · Glycerol · additive · chains CCC, DDD
- PEG · Di(hydroxyethyl)ether · additive · chains EEE
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03089
- Elsewhere: RCSB PDB 7ZIO · PDBe 7ZIO · UniProt P03089
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