MolNFT v2 · #201762 · protein
Eugenol oxidase from rhodococcus jostii: mutant S81H, A423M, H434Y, S394V, I445D, S518P
7YWU: “Eugenol oxidase from rhodococcus jostii: mutant S81H, A423M, H434Y, S394V, I445D, S518P”. X-ray diffraction at 2.8, 3 ligands (FAD, EOL, I7I). MolNFT v2 #201762 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7YWU
- Type
- protein
- Length
- 4,186 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.8
- Source
- Rhodococcus jostii
- UniProt
- Q0SBK1
- Ligands
- FAD, EOL, I7I
Structure
x-ray diffraction · resolution 2.8 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D | — | protein | 525 | — | Q0SBK1 |
| C, G | — | protein | 522 | — | Q0SBK1 |
| E | — | protein | 521 | — | Q0SBK1 |
| F | — | protein | 524 | — | Q0SBK1 |
| H | — | protein | 522 | — | Q0SBK1 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 6 copies · chains A, C, D, E, G, H
- EOL · 2-methoxy-4-(prop-2-en-1-yl)phenol · ligand · 5 copies · chains A, C, D, E, G
- I7I · [[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-5-[5-[(1~{R})-1-(3-methoxy-4-oxidanyl-phenyl)propyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-1~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate · ligand · 2 copies · chains B, F
- HEZ · Hexane-1,6-diol · additive · 4 copies · chains A, D, B, C
- GOL · Glycerol · additive · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0SBK1
- Elsewhere: RCSB PDB 7YWU · PDBe 7YWU · UniProt Q0SBK1
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