MolNFT v2 · #195456 · protein
SARS-CoV-2 nsp12/7/8 complex with a native N-terminus nsp9
7THM: “SARS-CoV-2 nsp12/7/8 complex with a native N-terminus nsp9”. Electron microscopy at 3.18, 3 ligands (POP, ZN, MN). MolNFT v2 #195456 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7THM
- Type
- protein
- Length
- 1,150 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.18
- Source
- Severe acute respiratory syndrome coronavirus 2
- UniProt
- P0DTD1
- Ligands
- POP, ZN, MN
Structure
electron microscopy · resolution 3.18 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 860 | — | P0DTD1 |
| B | — | protein | 108 | — | P0DTD1 |
| C | — | protein | 37 | — | P0DTD1 |
| D | — | protein | 71 | — | P0DTD1 |
| G | — | protein | 74 | — | P0DTD1 |
Ligands and binding sites
- POP · Pyrophosphate 2- · ligand · chains A, G
- ZN · Zinc ion · metal · 2 copies · chains A
- MN · Manganese (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7THM · SARS-cov-2 NSP12/7/8 complex with a native N-terminus NSP9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7THM · PDBe 7THM · UniProt P0DTD1
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