MolNFT v2 · #189562 · protein
HaloTag Engineering for Enhanced Fluorogenicity and Kinetics with a Styrylpyridine Dye
7OND: “HaloTag Engineering for Enhanced Fluorogenicity and Kinetics with a Styrylpyridine Dye”. X-ray diffraction at 1.45, 3 ligands (VF2, MG, CL). MolNFT v2 #189562 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OND
- Type
- protein
- Length
- 592 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.45
- Source
- Rhodococcus sp.
- UniProt
- P0A3G3
- Ligands
- VF2, MG, CL
Structure
x-ray diffraction · resolution 1.45 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 296 | — | P0A3G3 |
Ligands and binding sites
- VF2 · 4-[(E)-2-[1-(7-chloranylheptyl)pyridin-1-ium-4-yl]ethenyl]-N,N-dimethyl-aniline · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · chains B
- CL · Chloride ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7OND · Halotag engineering for enhanced fluorogenicity and kinetics with a styrylpyridine dye · the same entry in another collection · chain A against A, TM-score 1.00
- P0A3G3 · AlphaFold monomer V2.0 prediction for haloalkane dehalogenase (P0A3G3) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A3G3
- Elsewhere: RCSB PDB 7OND · PDBe 7OND · UniProt P0A3G3
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