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Ligand · VF2

VF2 · 4-[(E)-2-[1-(7-chloranylheptyl)pyridin-1-ium-4-yl]ethenyl]-N,N-dimethyl-aniline

VF2, 4-[(E)-2-[1-(7-chloranylheptyl)pyridin-1-ium-4-yl]ethenyl]-N,N-dimethyl-aniline (C22 H30 Cl N2 +1, 357.9 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within…

Component
VF2
Formula
C22 H30 Cl N2 +1
Class
ligand
Structures
3
PDB entries
2

Binding sites

VF2 in 3 structures; the first of them:

  • 7OND · HaloTag Engineering for Enhanced Fluorogenicity and Kinetics with a Styrylpyridine Dye · VF2 A401 · binds ASN41, ASP106, TRP141, PRO142, ALA145, PHE149, PRO243, GLY244 and 2 more
  • 7OND · Halotag engineering for enhanced fluorogenicity and kinetics with a styrylpyridine dye · VF2 A401 · binds ASN41, ASP106, TRP141, PRO142, ALA145, PHE149, PRO243, GLY244 and 2 more
  • 7OO4 · Halotag engineering for enhanced fluorogenicity and kinetics with a styrylpyridine dye · VF2 A402 · binds ASP106, PHE144, ALA145, THR148, THR172, MET175, ASN272

Residues it binds most

ALA 5, ASN 5, PRO 4, ASP 5, PHE 5, GLY 4, TRP 4, THR 1, MET 1 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • MG · Magnesium ion

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