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MolNFT v2 · #187317 · protein

Structure of EED bound to EEDi-6068

7MSD: “Structure of EED bound to EEDi-6068”. X-ray diffraction at 2.2, 1 ligand (ZMY). MolNFT v2 #187317 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7MSD
Type
protein
Length
359 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.2
Source
Homo sapiens
UniProt
O75530
Ligands
ZMY

Structure

x-ray diffraction · resolution 2.2 · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein359—O75530

Ligands and binding sites

  • ZMY · (9aP,12aR)-4-(2,2-difluoropropyl)-12-{[(5-fluoro-2,3-dihydro-1-benzofuran-4-yl)methyl]amino}-7-(trifluoromethyl)-4,5-dihydro-3H-2,4,8,11,12a-pentaazabenzo[4,5]cycloocta[1,2,3-cd]inden-3-one · ligand · chains A
  • FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7MSD · Structure of eed bound to eedi-6068 · the same entry in another collection · chain A against A, TM-score 1.00
  • O75530 · AlphaFold monomer V2.0 prediction for polycomb protein eed (O75530) · a predicted model of the same protein · chain A against A, TM-score 0.99

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