GL1X · GenesisL1 explorer

MolNFT v2 · #187300 · protein

F100A mutant structure of MIF2 (D-DT)

7MRV · D-dopachrome decarboxylase: “F100A mutant structure of MIF2 (D-DT)”. X-ray diffraction at 1.57, 1 ligand (SO4), 1 pocket (best druggability 0.39). MolNFT v2 #187300 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7MRV
Type
protein
Length
109 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.57
Source
Homo sapiens
Molecule
D-dopachrome decarboxylase
EC
4.1.1.84
UniProt
P30046
Ligands
SO4
Pockets
1 · best druggability 0.39

Structure

x-ray diffraction · resolution 1.57 · 1 distinct chain · 38% helix, 25% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AD-dopachrome decarboxylase (EC 4.1.1.84)protein10938% helix, 25% strandP30046

Ligands and binding sites

  • SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
1890.390.7715empty

Compared structures

  • 7MRV · F100A mutant structure of MIF2 (D-dt) · the same entry in another collection · chain A against A, TM-score 1.00
  • P30046 · AlphaFold monomer V2.0 prediction for D-dopachrome decarboxylase (P30046) · a predicted model of the same protein · chain A against A, TM-score 0.91

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