MolNFT v2 · #186460 · protein
Crystal structure of Human Lactate Dehydrogenase A with Inhibitor Compound 15
7M2N: “Crystal structure of Human Lactate Dehydrogenase A with Inhibitor Compound 15”. X-ray diffraction at 2.5, 3 ligands (NAI, YOJ, SO4). MolNFT v2 #186460 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7M2N
- Type
- protein
- Length
- 1,320 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- Homo sapiens
- UniProt
- P00338
- Ligands
- NAI, YOJ, SO4
Structure
x-ray diffraction · resolution 2.5 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 327 | — | P00338 |
| B | — | protein | 331 | — | P00338 |
| C, D | — | protein | 331 | — | P00338 |
Ligands and binding sites
- NAI · 1,4-dihydronicotinamide adenine dinucleotide · ligand · 4 copies · chains A, B, C, D
- YOJ · 5-[(5'-{1-(4-carboxy-1,3-thiazol-2-yl)-5-(cyclopropylmethyl)-4-[(3-fluoro-4-sulfamoylphenyl) methyl]-1H-pyrazol-3-yl}-2'-fluoro[1,1'-biphenyl]-4-yl)oxy]-1H-1,2,3-triazole-4-carboxylic acid · ligand · 4 copies · chains A, B, C, D
- SO4 · Sulfate ion · ion · 10 copies · chains A, C, B, D
- EDO · 1,2-ethanediol · additive · 75 copies · chains A, B, C, D
- GOL · Glycerol · additive · 6 copies · chains A, B, C, D
- PEG · Di(hydroxyethyl)ether · additive · 6 copies · chains A, D, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7M2N · Crystal structure of human lactate dehydrogenase a with inhibitor compound 15 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00338
- Elsewhere: RCSB PDB 7M2N · PDBe 7M2N · UniProt P00338
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