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MolNFT v2 · #186460 · protein

Crystal structure of Human Lactate Dehydrogenase A with Inhibitor Compound 15

7M2N: “Crystal structure of Human Lactate Dehydrogenase A with Inhibitor Compound 15”. X-ray diffraction at 2.5, 3 ligands (NAI, YOJ, SO4). MolNFT v2 #186460 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7M2N
Type
protein
Length
1,320 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.5
Source
Homo sapiens
UniProt
P00338
Ligands
NAI, YOJ, SO4

Structure

x-ray diffraction · resolution 2.5 · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein327—P00338
B—protein331—P00338
C, D—protein331—P00338

Ligands and binding sites

  • NAI · 1,4-dihydronicotinamide adenine dinucleotide · ligand · 4 copies · chains A, B, C, D
  • YOJ · 5-[(5'-{1-(4-carboxy-1,3-thiazol-2-yl)-5-(cyclopropylmethyl)-4-[(3-fluoro-4-sulfamoylphenyl) methyl]-1H-pyrazol-3-yl}-2'-fluoro[1,1'-biphenyl]-4-yl)oxy]-1H-1,2,3-triazole-4-carboxylic acid · ligand · 4 copies · chains A, B, C, D
  • SO4 · Sulfate ion · ion · 10 copies · chains A, C, B, D
  • EDO · 1,2-ethanediol · additive · 75 copies · chains A, B, C, D
  • GOL · Glycerol · additive · 6 copies · chains A, B, C, D
  • PEG · Di(hydroxyethyl)ether · additive · 6 copies · chains A, D, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7M2N · Crystal structure of human lactate dehydrogenase a with inhibitor compound 15 · the same entry in another collection · chain A against A, TM-score 1.00

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