MolNFT v2 · #186225 · protein + DNA
cryoEM structure DrdV-DNA complex
7LVV: “cryoEM structure DrdV-DNA complex”. Electron microscopy at 3.25, 1 ligand (CA). MolNFT v2 #186225 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LVV
- Type
- protein + DNA
- Length
- 2,424 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.25
- Source
- Deinococcus wulumuqiensis; SYNTHETIC CONSTRUCT
- UniProt
- A0A345IJ72
- Ligands
- CA
Structure
electron microscopy · resolution 3.25 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1012 | — | A0A345IJ72 |
| B | — | protein | 1013 | — | A0A345IJ72 |
| C | — | protein | 143 | — | A0A345IJ72 |
| D | — | protein | 146 | — | A0A345IJ72 |
| E, G | — | dna | 28 | — | — |
| F, H | — | dna | 27 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A, G, B, E, C, F, D, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LVV · Cryoem structure drdv-DNA complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A345IJ72
- Elsewhere: RCSB PDB 7LVV · PDBe 7LVV · UniProt A0A345IJ72
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