MolNFT v2 · #185917 · protein
Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and Ub6 (Class 3)
7LN1: “Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and Ub6 (Class 3)”. Electron microscopy at 3.4, 3 ligands (ATP, ADP, MG). MolNFT v2 #185917 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LN1
- Type
- protein
- Length
- 4,411 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.4
- Source
- Homo sapiens
- UniProt
- P55072
- Ligands
- ATP, ADP, MG
Structure
electron microscopy · resolution 3.4 · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 732 | — | P55072 |
| B | — | protein | 731 | — | P55072 |
| C | — | protein | 741 | — | P55072 |
| D | — | protein | 752 | — | P55072 |
| E | — | protein | 743 | — | P55072 |
| F | — | protein | 703 | — | P55072 |
| G | — | protein | 9 | — | — |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 7 copies · chains A, B, C, D, E, F
- ADP · Adenosine-5'-diphosphate · ligand · 5 copies · chains A, F, B, C
- MG · Magnesium ion · metal · 7 copies · chains B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LN1 · Cryo-EM structure of human P97 in complex with NPL4/UFD1 and UB6 (class 3) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55072
- Elsewhere: RCSB PDB 7LN1 · PDBe 7LN1 · UniProt P55072
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