MolNFT v2 · #185701 · protein
HLA-B*07:02 in complex with SARS-CoV-2 nucleocapsid peptide N105-113
7LGD: “HLA-B*07:02 in complex with SARS-CoV-2 nucleocapsid peptide N105-113”. X-ray diffraction at 2.88, 3 ligands (NA, CL, SO4). MolNFT v2 #185701 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LGD
- Type
- protein
- Length
- 770 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.88
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- P01889, P61769, P0DTC9
- Ligands
- NA, CL, SO4
Structure
x-ray diffraction · resolution 2.88 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 276 | — | P01889 |
| B, D | — | protein | 100 | — | P61769 |
| E, F | — | protein | 9 | — | P0DTC9 |
Ligands and binding sites
- NA · Sodium ion · metal
- CL · Chloride ion · ion · 5 copies · chains A, B, C, D
- SO4 · Sulfate ion · ion · 4 copies · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LGD · HLA-B*07:02 in complex with SARS-cov-2 nucleocapsid peptide N105-113 · the same entry in another collection · chain F against F, TM-score 1.00
- P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain D against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01889
- Every structure of UniProt P61769
- Every structure of UniProt P0DTC9
- Elsewhere: RCSB PDB 7LGD · PDBe 7LGD · UniProt P01889 · UniProt P61769 · UniProt P0DTC9
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