MolNFT v2 · #184382 · protein
BG505 SOSIP.664 in complex with the V3-targeting rhesus macaque antibody 1485 and human gp120-gp41 interface antibody 8ANC195
7KDE: “BG505 SOSIP.664 in complex with the V3-targeting rhesus macaque antibody 1485 and human gp120-gp41 interface…”. Electron microscopy at 3.55, 4 ligands (NAG, MAN, BMA). MolNFT v2 #184382 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7KDE
- Type
- protein
- Length
- 3,069 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.55
- Source
- Homo sapiens; Human immunodeficiency virus 1
- UniProt
- Q2N0S6
- Ligands
- NAG, MAN, BMA, FUC
Structure
electron microscopy · resolution 3.55 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 123 | — | Q2N0S6 |
| E, F, G | — | protein | 429 | — | Q2N0S6 |
| H, J, M | — | protein | 129 | — | — |
| O, Q, S | — | protein | 132 | — | — |
| P, R, T | — | protein | 107 | — | — |
| I, L, N | — | protein | 103 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 82 copies · chains A, T, S, B, P, O, C, R, Q, E, M, F, J, G, H
- MAN · alpha-D-mannopyranose · sugar · 35 copies · chains M, S, N, Q, J, I, H, O
- BMA · beta-D-mannopyranose · sugar · 15 copies · chains M, S, J, Q, O, H
- FUC · alpha-L-fucopyranose · sugar · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KDE · BG505 SOSIP.664 in complex with the V3-targeting rhesus macaque antibody 1485 and human… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 7KDE · PDBe 7KDE · UniProt Q2N0S6
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