MolNFT v2 · #181134 · protein
SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z1429867185
7FSQ: “SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z1429867185”. X-ray diffraction at 2.07, 2 ligands (VVP, SO4). MolNFT v2 #181134 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7FSQ
- Type
- protein
- Length
- 773 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.07
- Source
- Homo sapiens
- UniProt
- O00560
- Ligands
- VVP, SO4
Structure
x-ray diffraction · resolution 2.07 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 191 | — | O00560 |
| B | — | protein | 194 | — | O00560 |
| C | — | protein | 194 | — | O00560 |
| D | — | protein | 194 | — | O00560 |
Ligands and binding sites
- VVP · 4-methoxy-1H-indole · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 2 copies · chains D
- EDO · 1,2-ethanediol · additive · 8 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- O00560 · AlphaFold monomer V2.0 prediction for syntenin-1 (O00560) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O00560
- Elsewhere: RCSB PDB 7FSQ · PDBe 7FSQ · UniProt O00560
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