MolNFT v2 · #177456 · protein
Crystal Structure of COVID-19 virus spike receptor-binding domain complexed with a neutralizing antibody CT-P59
7CM4: “Crystal Structure of COVID-19 virus spike receptor-binding domain complexed with a neutralizing antibody…”. X-ray diffraction at 2.71, 4 ligands (NAG, MAN, FUC). MolNFT v2 #177456 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7CM4
- Type
- protein
- Length
- 635 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.71
- Source
- Homo sapiens; Severe acute respiratory syndrome coronavirus 2
- UniProt
- P0DTC2
- Ligands
- NAG, MAN, FUC, NI
Structure
x-ray diffraction · resolution 2.71 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 196 | — | P0DTC2 |
| H | — | protein | 225 | — | — |
| L | — | protein | 214 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- FUC · alpha-L-fucopyranose · sugar
- NI · Nickel (II) ion · metal · 2 copies · chains H, L
- EDO · 1,2-ethanediol · additive · 2 copies · chains L, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7CM4 · Crystal structure of COVID-19 virus spike receptor-binding domain complexed with a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7CM4 · PDBe 7CM4 · UniProt P0DTC2
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