MolNFT v2 · #173694 · protein
OleP-oleandolide(DEO) in low salt crystallization conditions
6ZI2: “OleP-oleandolide(DEO) in low salt crystallization conditions”. X-ray diffraction at 2.93, 2 ligands (HEM, QR8). MolNFT v2 #173694 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZI2
- Type
- protein
- Length
- 3,382 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.93
- Source
- Streptomyces antibioticus
- UniProt
- Q59819
- Ligands
- HEM, QR8
Structure
x-ray diffraction · resolution 2.93 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D, F | — | protein | 394 | — | Q59819 |
| B, C, H | — | protein | 395 | — | Q59819 |
| E | — | protein | 386 | — | Q59819 |
| G | — | protein | 381 | — | Q59819 |
| I | — | protein | 248 | — | Q59819 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 9 copies · chains A, B, C, D, E, F, G, H, I
- QR8 · (3~{R},4~{S},5~{R},6~{S},7~{S},9~{S},11~{R},12~{S}, 13~{R},14~{R})-3,5,7,9,11,13,14-heptamethyl-4,6,12-tris(oxidanyl)-1-oxacyclotetradecane-2,10-dione · ligand · 9 copies · chains A, B, C, D, E, F, G, H, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZI2 · Olep-OLEANDOLIDE(DEO) in low salt crystallization conditions · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q59819
- Elsewhere: RCSB PDB 6ZI2 · PDBe 6ZI2 · UniProt Q59819
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