GL1X · GenesisL1 explorer

MolNFT v2 · #173068 · protein

Crystal structure of P8C9 bound to CK2alpha

6YZH: “Crystal structure of P8C9 bound to CK2alpha”. X-ray diffraction at 1.19, 3 ligands (ADP, MG, NA). MolNFT v2 #173068 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6YZH
Type
protein
Length
353 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.19
Source
Homo sapiens
UniProt
P68400
Ligands
ADP, MG, NA

Structure

x-ray diffraction · resolution 1.19 · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein344—P68400
D—protein9——

Ligands and binding sites

  • ADP · Adenosine-5'-diphosphate · ligand · chains A
  • MG · Magnesium ion · metal · 2 copies · chains A
  • NA · Sodium ion · metal · chains A
  • GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6YZH · Crystal structure of P8C9 bound to CK2ALPHA · the same entry in another collection · chain A against A, TM-score 1.00
  • P68400 · AlphaFold monomer V2.0 prediction for casein kinase II subunit alpha (P68400) · a predicted model of the same protein · chain A against A, TM-score 0.95

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