MolNFT v2 · #173005 · protein

Crystal structure of ACPA 3F3 in complex with cit-vimentin 59-74

6YXK: “Crystal structure of ACPA 3F3 in complex with cit-vimentin 59-74”. X-ray diffraction at 2, 1 ligand (NAG). MolNFT v2 #173005 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6YXK
Type: protein
Length: 447 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2
Source: Homo sapiens; SYNTHETIC CONSTRUCT
UniProt: P08670
Ligands: NAG

Structure

x-ray diffraction · resolution 2 · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	220	—	—
B	—	protein	218	—	—
C	—	protein	9	—	P08670

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6YXK · Crystal structure of acpa 3F3 in complex with cit-vimentin 59-74 · the same entry in another collection · chain A against A, TM-score 1.00
P08670 · AlphaFold monomer V2.0 prediction for vimentin (P08670) · a predicted model of the same protein · chain C against A, TM-score 0.40

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08670
Elsewhere: RCSB PDB 6YXK · PDBe 6YXK · UniProt P08670

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