MolNFT v2 · #172368 · protein
Virus-like particle of bacteriophage AVE019
6YFC: “Virus-like particle of bacteriophage AVE019”. X-ray diffraction at 3.246, 1 ligand (CA). MolNFT v2 #172368 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YFC
- Type
- protein
- Length
- 21,900 residues
- Chains
- 180
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.246
- Source
- Leviviridae sp.
- Ligands
- CA
Structure
x-ray diffraction · resolution 3.246 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| AA, AC, AD, AF, AG, AI, AJ, AL, AM, AO, AP, AR, AS, AU, AV, AX, AY, BA, BB, BD, BE, BG, BH, BJ, BK, BM, BN, BP, BQ, BS, BT, BV, BW, BY, BZ, CB, CC, CE, CF, CH, CI, CK, CL, CN, CO, CQ, CR, CT, CU, CW, CX, CZ, DA, DC, DD, DF, DG, DI, DJ, DL, DM, DO, DP, DR, DS, DU, DV, DX, DY, EA, EB, ED, EE, EG, EH, EJ, EK, EM, EN, EP, EQ, ES, ET, EV, EW, EY, EZ, FB, FC, FE, FF, FH, FI, FK, FL, FN, FO, FQ, FR, FT, FU, FW, FX, FZ, GA, GC, GD, GF, GG, GI, GJ, GL, GM, GO, GP, GR, GS, GU, GV, GX | — | protein | 124 | — | — |
| AB, AE, AH, AK, AN, AQ, AT, AW, AZ, BC, BF, BI, BL, BO, BR, BU, BX, CA, CD, CG, CJ, CM, CP, CS, CV, CY, DB, DE, DH, DK, DN, DQ, DT, DW, DZ, EC, EF, EI, EL, EO, ER, EU, EX, FA, FD, FG, FJ, FM, FP, FS, FV, FY, GB, GE, GH, GK, GN, GQ, GT, GW | — | protein | 117 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 60 copies · chains AA, AB, AC, BI, DO, AD, AE, AF, BC, DR, GA, AG, AH, AI, BF, DU, GD, AJ, AK, AL, BX, DX, AM, AN, AO, CA, EA, FR, AP, AQ, AR, BU, ED, AS, AT, AU, EG, EL, AV, AW, AX, EF, EJ, AY, AZ, BA, EI, EM, BB, BD, BR, EP, BE, BG, BL, ES, BH, BJ, BO, EV, BK, BM, DW, EY, BN, BP, DZ, FB, BQ, BS, EC, FE, BT, BV, DN, FH, BW, BY, DQ, FK, BZ, CB, DT, FN, CC, CD, CE, FQ, GK, CF, CG, CH, CL, FT, GN, CI, CJ, CK, FW, GH, CM, CN, FZ, CO, CP, CQ, GC, CR, CS, CT, GF, CU, CV, CW, DH, GI, GM, CX, CY, CZ, DK, GL, DA, DB, DC, DE, GO, DD, DF, GR, DG, DI, GU, DJ, DL, GX, DM, GT, DP, GW, DS, GQ, DV, GE, DY, FY, EB, GB, EE, EU, EH, EO, EK, ER, EN, FJ, EQ, FM, ET, FG, EW, EX, EZ, FA, FC, FD, FF, FI, FL, FO, FP, FS, FU, FV, FX, GG, GJ, GP, GS, GV
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6YFC · PDBe 6YFC
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