MolNFT v2 · #171717 · protein + DNA

Crystal Structure of the Human RXR/RAR DNA-Binding Domain Heterodimer Bound to the Human RARb2 DR5 Response Element

6XWG: “Crystal Structure of the Human RXR/RAR DNA-Binding Domain Heterodimer Bound to the Human RARb2 DR5 Response…”. X-ray diffraction at 2.4, 2 ligands (ZN, CL). MolNFT v2 #171717 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 6XWG
Type: protein + DNA
Length: 201 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.4
Source: Homo sapiens; SYNTHETIC CONSTRUCT
UniProt: P19793, P10276
Ligands: ZN, CL

Structure

x-ray diffraction · resolution 2.4 · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	dna	21	—	—
B	—	dna	21	—	—
C	—	protein	79	—	P19793
D	—	protein	80	—	P10276

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains C, D
CL · Chloride ion · ion · chains C
GOL · Glycerol · additive · chains C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6XWG · Crystal structure of the human RXR/RAR DNA-binding domain heterodimer bound to the human… · the same entry in another collection · chain A against A, TM-score 1.00
P10276 · AlphaFold monomer V2.0 prediction for retinoic acid receptor alpha (P10276) · a predicted model of the same protein · chain D against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P19793
Every structure of UniProt P10276
Elsewhere: RCSB PDB 6XWG · PDBe 6XWG · UniProt P19793 · UniProt P10276

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