MolNFT v2 · #171088 · protein
Crystal Structure of NendoU (Uridylate-specific endoribonuclease, nsp15) from Betacoronavirus SARS-CoV-2
6XDH: “Crystal Structure of NendoU (Uridylate-specific endoribonuclease, nsp15) from Betacoronavirus SARS-CoV-2”. X-ray diffraction at 2.35. MolNFT v2 #171088 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XDH
- Type
- protein
- Length
- 696 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.35
- Source
- Severe acute respiratory syndrome coronavirus 2
- UniProt
- P0DTD1
Structure
x-ray diffraction · resolution 2.35 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 347 | — | P0DTD1 |
| B | — | protein | 349 | — | P0DTD1 |
Ligands and binding sites
- FMT · Formic acid · additive · 5 copies · chains A, B
- ACT · Acetate ion · additive · 3 copies · chains A, B
- CIT · Citric acid · additive · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XDH · Crystal structure of nendou (uridylate-specific endoribonuclease, NSP15) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 6XDH · PDBe 6XDH · UniProt P0DTD1
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