MolNFT v2 · #170704 · protein
WOR5 from Pyrococcus furiosus, as crystallized
6X1O: “WOR5 from Pyrococcus furiosus, as crystallized”. X-ray diffraction at 2.094, 6 ligands (SF4, UKM, PTE). MolNFT v2 #170704 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6X1O
- Type
- protein
- Length
- 1,579 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.094
- Source
- Pyrococcus furiosus COM1
- UniProt
- I6V2C3, I6U881
- Ligands
- SF4, UKM, PTE, MG, PO4, CL
Structure
x-ray diffraction · resolution 2.094 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 623 | — | I6V2C3 |
| B, D | — | protein | 166 | — | I6U881 |
| C | — | protein | 624 | — | I6V2C3 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 10 copies · chains A, B, C, D
- UKM · (1R)-1-hydroxybutane-1-sulfonic acid · ligand · 2 copies · chains A, C
- PTE · Tungstopterin cofactor · ligand · 2 copies · chains A, C
- MG · Magnesium ion · metal · 4 copies · chains A, C
- PO4 · Phosphate ion · ion · 2 copies · chains A, B, D, C
- CL · Chloride ion · ion · 2 copies · chains B, C, A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6X1O · WOR5 from pyrococcus furiosus, as crystallized · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I6V2C3
- Every structure of UniProt I6U881
- Elsewhere: RCSB PDB 6X1O · PDBe 6X1O · UniProt I6V2C3 · UniProt I6U881
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