MolNFT v2 · #169631 · protein
1.95 A resolution structure of Norovirus 3CL protease in complex with inhibitor 5g
6W5K: “1.95 A resolution structure of Norovirus 3CL protease in complex with inhibitor 5g”. X-ray diffraction at 1.95, 1 ligand (TKV). MolNFT v2 #169631 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6W5K
- Type
- protein
- Length
- 642 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.95
- Source
- Norwalk virus (strain GI/Human/United States/Norwalk/1968)
- UniProt
- Q83883
- Ligands
- TKV
Structure
x-ray diffraction · resolution 1.95 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 158 | — | Q83883 |
| B | — | protein | 163 | — | Q83883 |
| C | — | protein | 160 | — | Q83883 |
| D | — | protein | 161 | — | Q83883 |
Ligands and binding sites
- TKV · N~2~-{[2-(3-chlorophenyl)-2-methylpropoxy]carbonyl}-N-{(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}-L-leucinamide · ligand · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6W5K · 1.95 a resolution structure of norovirus 3CL protease in complex with inhibitor 5G · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q83883
- Elsewhere: RCSB PDB 6W5K · PDBe 6W5K · UniProt Q83883
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