MolNFT v2 · #168999 · RNA
Structure of the B. subtilis cobalamin riboswitch
6VMY: “Structure of the B. subtilis cobalamin riboswitch”. X-ray diffraction at 3.25, 3 ligands (NCO, B1Z, MG). MolNFT v2 #168999 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VMY
- Type
- RNA
- Length
- 148 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.25
- Source
- Bacillus subtilis
- Ligands
- NCO, B1Z, MG
Structure
x-ray diffraction · resolution 3.25 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 148 | — | — |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · 7 copies · chains A
- B1Z · Adenosylcobalamin · ligand · chains A
- MG · Magnesium ion · metal · 12 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VMY · Structure of the B. subtilis cobalamin riboswitch · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6VMY · PDBe 6VMY
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