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Ligand · B1Z

B1Z · Adenosylcobalamin

B1Z, Adenosylcobalamin (C72 H101 Co N18 O17 P, 1580.6 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
B1Z
Formula
C72 H101 Co N18 O17 P
Class
ligand
Structures
3
PDB entries
2

Binding sites

B1Z in 3 structures; the first of them:

  • 6VMY · Structure of the B. subtilis cobalamin riboswitch · B1Z A412 · binds G245, G246, A247, G268, U269, C275, A276, G305 and 4 more
  • 8SA2 · Adenosylcobalamin-bound riboswitch dimer, form 1 · B1Z A301 · binds G49, G50, A51, G74, C75, U82, A83, U116 and 11 more
  • 8SA5 · Adenosylcobalamin-bound riboswitch dimer, form 4 · B1Z A301 · binds G49, G50, A51, G74, C75, C81, U82, A83 and 12 more
  • 6VMY · Structure of the B. subtilis cobalamin riboswitch · B1Z A412 · binds G245, G246, A247, G268, U269, C275, A276, G305 and 4 more

Residues it binds most

G 6, A 6, C 6, U 6 (residue and the binding sites it lines).

Found with

  • NCO · Cobalt hexammine(iii)
  • MG · Magnesium ion

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