MolNFT v2 · #168777 · protein

Human protocadherin 10 ectodomain

6VG4: “Human protocadherin 10 ectodomain”. X-ray diffraction at 3.298, 7 ligands (TAM, NAG, MAN). MolNFT v2 #168777 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6VG4
Type: protein
Length: 646 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 3.298
Source: Homo sapiens
UniProt: Q9P2E7
Ligands: TAM, NAG, MAN, BMA, CA, NA, CL

Structure

x-ray diffraction · resolution 3.298 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	646	—	Q9P2E7

Ligands and binding sites

TAM · Tris(hydroxyethyl)aminomethane · ligand · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
MAN · alpha-D-mannopyranose · sugar · 3 copies · chains A
BMA · beta-D-mannopyranose · sugar
CA · Calcium ion · metal · 15 copies · chains A
NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6VG4 · Human protocadherin 10 ectodomain · the same entry in another collection · chain A against A, TM-score 1.00
Q9P2E7 · AlphaFold monomer V2.0 prediction for protocadherin-10 (Q9P2E7) · a predicted model of the same protein · chain A against A, TM-score 0.78

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9P2E7
Elsewhere: RCSB PDB 6VG4 · PDBe 6VG4 · UniProt Q9P2E7

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