MolNFT v2 · #163058 · protein
Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with inhibitor
6QRB: “Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with…”. X-ray diffraction at 1.66, 1 ligand (JEQ). MolNFT v2 #163058 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QRB
- Type
- protein
- Length
- 425 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.66
- Source
- Mycobacterium abscessus
- UniProt
- B1MDI3
- Ligands
- JEQ
Structure
x-ray diffraction · resolution 1.66 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 220 | — | B1MDI3 |
| B | — | protein | 205 | — | B1MDI3 |
Ligands and binding sites
- JEQ · 5-azanyl-3-[1-[[(3~{R})-1-(phenylmethyl)piperidin-3-yl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrile · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6QRB · Crystal structure of trmd, a tRNA-(N1G37) methyltransferase, from mycobacterium abscessus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1MDI3
- Elsewhere: RCSB PDB 6QRB · PDBe 6QRB · UniProt B1MDI3
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