MolNFT v2 · #162416 · protein
Structure of Fucosylated D-antimicrobial peptide SB8 in complex with the Fucose-binding lectin PA-IIL at 1.190 Angstrom resolution
6Q8G: “Structure of Fucosylated D-antimicrobial peptide SB8 in complex with the Fucose-binding lectin PA-IIL at…”. X-ray diffraction at 1.19, 3 ligands (ZDC, CA, NH2). MolNFT v2 #162416 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6Q8G
- Type
- protein
- Length
- 480 residues
- Chains
- 7
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.19
- Source
- Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT
- UniProt
- A0A069Q9V4
- Ligands
- ZDC, CA, NH2
Structure
x-ray diffraction · resolution 1.19 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 114 | — | A0A069Q9V4 |
| E, F | — | protein | 11 | — | — |
| G | — | protein | 2 | — | — |
Ligands and binding sites
- ZDC · 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid · sugar · 4 copies · chains A, E, B, F, C, D, G
- CA · Calcium ion · metal · 8 copies · chains A, B, C, D
- NH2 · Amino group · ion · 2 copies · chains E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Q8G · Structure of fucosylated D-antimicrobial peptide SB8 in complex with the fucose-binding… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A069Q9V4
- Elsewhere: RCSB PDB 6Q8G · PDBe 6Q8G · UniProt A0A069Q9V4
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