MolNFT v2 · #161662 · protein
Structure of ClpP from Staphylococcus aureus in complex with Acyldepsipeptide
6PMD: “Structure of ClpP from Staphylococcus aureus in complex with Acyldepsipeptide”. X-ray diffraction at 2.21. MolNFT v2 #161662 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PMD
- Type
- protein
- Length
- 2,614 residues
- Chains
- 25
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.21
- Source
- Staphylococcus aureus (strain NCTC 8325); SYNTHETIC CONSTRUCT
- UniProt
- Q2G036
Structure
x-ray diffraction · resolution 2.21 · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 184 | — | Q2G036 |
| B, C, L | — | protein | 182 | — | Q2G036 |
| D, S | — | protein | 182 | — | Q2G036 |
| E, N | — | protein | 182 | — | Q2G036 |
| F, G | — | protein | 181 | — | Q2G036 |
| I | — | protein | 183 | — | Q2G036 |
| K | — | protein | 183 | — | Q2G036 |
| M, T | — | protein | 181 | — | Q2G036 |
| H, J, O, P, Q, R, U, V, X, Y, Z | — | protein | 6 | — | — |
Ligands and binding sites
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 14 copies · chains A, B, C, D, E, F, G, I, K, L, M, N, S, T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PMD · Structure of clpp from staphylococcus aureus in complex with acyldepsipeptide · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2G036
- Elsewhere: RCSB PDB 6PMD · PDBe 6PMD · UniProt Q2G036
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