MolNFT v1 · #160506 · protein
Structure of clpp from staphylococcus aureus in complex with acyldepsipeptide
6PMD: “Structure of clpp from staphylococcus aureus in complex with acyldepsipeptide”. X-ray diffraction, 1 ligand (SHV). MolNFT v1 #160506 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PMD
- Type
- protein
- Length
- 2,614 residues
- Chains
- 25
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2G036
- Ligands
- SHV
Structure
x-ray diffraction · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 184 | — | Q2G036 |
| B, C, L | — | protein | 182 | — | Q2G036 |
| D, S | — | protein | 182 | — | Q2G036 |
| E, N | — | protein | 182 | — | Q2G036 |
| F, G | — | protein | 181 | — | Q2G036 |
| I | — | protein | 183 | — | Q2G036 |
| K | — | protein | 183 | — | Q2G036 |
| M, T | — | protein | 181 | — | Q2G036 |
| H, J, O, P, Q, R, U, V, X, Y, Z | — | protein | 6 | — | — |
Ligands and binding sites
- SHV · Heptanoic acid · ligand · 11 copies · chains A, B, H, C, J, D, O, E, P, F, Q, G, R, K, L, U, M, V, N, X, S, T, Y, I, Z
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 14 copies · chains A, B, C, D, E, F, G, I, K, L, M, N, S, T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PMD · Structure of ClpP from Staphylococcus aureus in complex with Acyldepsipeptide · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2G036
- Elsewhere: RCSB PDB 6PMD · PDBe 6PMD · UniProt Q2G036
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