MolNFT v2 · #161316 · protein
Crystal structure of beta-ketoadipyl-CoA thiolase mutant (C90S-H356A) in complex Octanoyl coenzyme A
6PCD: “Crystal structure of beta-ketoadipyl-CoA thiolase mutant (C90S-H356A) in complex Octanoyl coenzyme A”. X-ray diffraction at 1.37, 4 ligands (OYA, COA, K). MolNFT v2 #161316 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6PCD
- Type
- protein
- Length
- 1,594 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.37
- Source
- Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
- UniProt
- Q88N39
- Ligands
- OYA, COA, K, CL
Structure
x-ray diffraction · resolution 1.37 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 401 | — | Q88N39 |
| B | — | protein | 394 | — | Q88N39 |
| C | — | protein | 397 | — | Q88N39 |
| D | — | protein | 402 | — | Q88N39 |
Ligands and binding sites
- OYA · Octanal · ligand · 3 copies · chains A, D, B, C
- COA · Coenzyme A · ligand · 2 copies · chains A, D
- K · Potassium ion · metal · 3 copies · chains B, C, D
- CL · Chloride ion · ion · 5 copies · chains A, B, C, D
- GOL · Glycerol · additive · 5 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PCD · Crystal structure of beta-ketoadipyl-CoA thiolase mutant (C90S-H356A) in complex octanoyl… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q88N39
- Elsewhere: RCSB PDB 6PCD · PDBe 6PCD · UniProt Q88N39
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