MolNFT v2 · #161311 · protein + RNA
E. coli 50S ribosome bound to compound 40q
6PC8: “E. coli 50S ribosome bound to compound 40q”. Electron microscopy at 2.9, 1 ligand (O7Y). MolNFT v2 #161311 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PC8
- Type
- protein + RNA
- Length
- 3,982 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.9
- Source
- Escherichia coli
- UniProt
- P60422, A0A037Y8L6, D7Z9F6, P60438, D7ZET0
- Ligands
- O7Y
Structure
electron microscopy · resolution 2.9 · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| I | — | rna | 2897 | — | — |
| J | — | rna | 118 | — | — |
| K | — | protein | 271 | — | P60422 |
| L | — | protein | 144 | — | A0A037Y8L6 |
| M | — | protein | 201 | — | D7Z9F6 |
| N | — | protein | 209 | — | P60438 |
| O | — | protein | 142 | — | D7ZET0 |
Ligands and binding sites
- O7Y · (2R)-2-[(3s,4r,5e,10e,12e,14s,26ar)-14-hydroxy-4,12-dimethyl-1,7,16,22-tetraoxo-4,7,8,9,14,15,16,17,24,25, 26,26A-dodecahydro-1H,3H,22H-21,18-(azeno)pyrrolo[2,1-c][1,8,4,19]dioxadiazacyclotetracosin-3-yl]propyl isoquinolin-3-ylcarbamate · ligand · chains I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PC8 · E. COLI 50S ribosome bound to compound 40Q · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P60422
- Every structure of UniProt A0A037Y8L6
- Every structure of UniProt D7Z9F6
- Every structure of UniProt P60438
- Every structure of UniProt D7ZET0
- Elsewhere: RCSB PDB 6PC8 · PDBe 6PC8 · UniProt P60422 · UniProt A0A037Y8L6 · UniProt D7Z9F6 · UniProt P60438 · UniProt D7ZET0
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