MolNFT v2 · #160513 · protein
Dehaloperoxidase B in complex with substrate 4-methyl-cresol
6ONR: “Dehaloperoxidase B in complex with substrate 4-methyl-cresol”. X-ray diffraction at 1.35, 3 ligands (HEM, N0D, SO4). MolNFT v2 #160513 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ONR
- Type
- protein
- Length
- 274 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.35
- Source
- Amphitrite ornata
- UniProt
- Q9NAV7
- Ligands
- HEM, N0D, SO4
Structure
x-ray diffraction · resolution 1.35 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 137 | — | Q9NAV7 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
- N0D · 2,4-dimethylphenol · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ONR · Dehaloperoxidase B in complex with substrate 4-methyl-cresol · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NAV7
- Elsewhere: RCSB PDB 6ONR · PDBe 6ONR · UniProt Q9NAV7
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