MolNFT v2 · #16035 · protein

Structure of yqgF from Escherichia coli, a hypothetical protein

1NMN · Hypothetical protein yqgF: “Structure of yqgF from Escherichia coli, a hypothetical protein”. X-ray diffraction at 2.3, 1 pocket (best druggability 0.53). MolNFT v2 #16035 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 1NMN
Type: protein
Length: 237 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.3
Source: Escherichia coli
Molecule: Hypothetical protein yqgF
UniProt: P0A8I1
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · resolution 2.3 · 2 distinct chains · 35% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein yqgF	protein	120	34% helix, 33% strand	P0A8I1
B	Hypothetical protein yqgF	protein	117	36% helix, 33% strand	P0A8I1

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	194	0.53	0.78	25	empty

Interfaces

1 interface between chains.

A–B · 456 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

1NMN · Structure of yqgf from escherichia COLI, a hypothetical protein · the same entry in another collection · chain A against A, TM-score 1.00
P0A8I1 · AlphaFold monomer V2.0 prediction for putative pre-16S rRNA nuclease (P0A8I1) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A8I1
Elsewhere: RCSB PDB 1NMN · PDBe 1NMN · UniProt P0A8I1

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