MolNFT v1 · #16027 · protein
Structure of yqgf from escherichia COLI, a hypothetical protein
1NMN · Hypothetical protein yqgf: “Structure of yqgf from escherichia COLI, a hypothetical protein”. X-ray diffraction, 1 pocket (best druggability 0.53). MolNFT v1 #16027 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1NMN
- Type
- protein
- Length
- 237 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein yqgf
- UniProt
- P0A8I1
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein yqgf | protein | 120 | 34% helix, 33% strand | P0A8I1 |
| B | Hypothetical protein yqgf | protein | 117 | 36% helix, 33% strand | P0A8I1 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 194 | 0.53 | 0.78 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 456 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 1NMN · Structure of yqgF from Escherichia coli, a hypothetical protein · the same entry in another collection · chain A against A, TM-score 1.00
- P0A8I1 · AlphaFold monomer V2.0 prediction for putative pre-16S rRNA nuclease (P0A8I1) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A8I1
- Elsewhere: RCSB PDB 1NMN · PDBe 1NMN · UniProt P0A8I1
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