MolNFT v2 · #159913 · protein + RNA
Crystal structure of DEAD-box RNA helicase DDX3X at pre-unwound state
6O5F: “Crystal structure of DEAD-box RNA helicase DDX3X at pre-unwound state”. X-ray diffraction at 2.504, 1 ligand (CL). MolNFT v2 #159913 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6O5F
- Type
- protein + RNA
- Length
- 881 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.504
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- O00571
- Ligands
- CL
Structure
x-ray diffraction · resolution 2.504 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 417 | — | O00571 |
| C | — | rna | 23 | — | — |
| D | — | rna | 24 | — | — |
Ligands and binding sites
- CL · Chloride ion · ion · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6O5F · Crystal structure of dead-box RNA helicase DDX3X at pre-unwound state · the same entry in another collection · chain A against A, TM-score 1.00
- O00571 · AlphaFold monomer V2.0 prediction for ATP-dependent RNA helicase DDX3X (O00571) · a predicted model of the same protein · chain A against A, TM-score 0.61
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O00571
- Elsewhere: RCSB PDB 6O5F · PDBe 6O5F · UniProt O00571
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