MolNFT v2 · #159438 · protein
Cryo-EM structure of the TRPM8 ion channel in complex with high occupancy icilin, PI(4,5)P2, and calcium
6NR3: “Cryo-EM structure of the TRPM8 ion channel in complex with high occupancy icilin, PI(4,5)P2, and calcium”. Electron microscopy at 3.4, 3 ligands (KX7, KXP, CA). MolNFT v2 #159438 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6NR3
- Type
- protein
- Length
- 3,416 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.4
- Source
- Ficedula albicollis
- Ligands
- KX7, KXP, CA
Structure
electron microscopy · resolution 3.4 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 854 | — | — |
Ligands and binding sites
- KX7 · Icilin · ligand · 4 copies · chains A, B, C, D
- KXP · (2S)-1-{[(R)-hydroxy{[(1r,2r,3s,4r,5r,6s)-2,3,6-trihydroxy-4,5-bis(phosphonooxy) cyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy) propan-2-yl icosa-5,8,11,14-tetraenoate · ligand · 4 copies · chains A, D, B, C
- CA · Calcium ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6NR3 · Cryo-EM structure of the TRPM8 ion channel in complex with high occupancy icilin… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6NR3 · PDBe 6NR3
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