MolNFT v2 · #158853 · protein
Structure of a peptide-based photo-affinity cross-linker with Herceptin Fc
6N9T: “Structure of a peptide-based photo-affinity cross-linker with Herceptin Fc”. X-ray diffraction at 2.576, 5 ligands (NAG, MAN, BMA). MolNFT v2 #158853 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6N9T
- Type
- protein
- Length
- 440 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.576
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- Q6MZV7
- Ligands
- NAG, MAN, BMA, FUL, FUC
Structure
x-ray diffraction · resolution 2.576 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 207 | — | Q6MZV7 |
| E, F | — | protein | 13 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A, B
- MAN · alpha-D-mannopyranose · sugar · 4 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar · 2 copies · chains A, B
- FUL · beta-L-fucopyranose · sugar · chains A
- FUC · alpha-L-fucopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6N9T · Structure of a peptide-based photo-affinity cross-linker with herceptin Fc · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6MZV7
- Elsewhere: RCSB PDB 6N9T · PDBe 6N9T · UniProt Q6MZV7
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