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MolNFT v2 · #158730 · protein + RNA

Vibrio cholerae Oligoribonuclease bound to pAA

6N6C: “Vibrio cholerae Oligoribonuclease bound to pAA”. X-ray diffraction at 1.619, 1 ligand (NA). MolNFT v2 #158730 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6N6C
Type
protein + RNA
Length
183 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.619
Source
Vibrio cholerae; SYNTHETIC CONSTRUCT
UniProt
A5F3M7
Ligands
NA

Structure

x-ray diffraction · resolution 1.619 · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein181—A5F3M7
D—rna2——

Ligands and binding sites

  • NA · Sodium ion · metal · chains A, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6N6C · Vibrio cholerae oligoribonuclease bound to paa · the same entry in another collection · chain A against A, TM-score 1.00
  • A5F3M7 · AlphaFold monomer V2.0 prediction for oligoribonuclease (A5F3M7) · a predicted model of the same protein · chain A against A, TM-score 0.99

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