MolNFT v1 · #157656 · protein + RNA

Vibrio cholerae oligoribonuclease bound to paa

6N6C: “Vibrio cholerae oligoribonuclease bound to paa”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #157656 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6N6C
Type: protein + RNA
Length: 183 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A5F3M7
Ligands: NA

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	181	—	A5F3M7
D	—	rna	2	—	—

Ligands and binding sites

NA · Sodium ion · metal · chains A, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6N6C · Vibrio cholerae Oligoribonuclease bound to pAA · the same entry in another collection · chain A against A, TM-score 1.00
A5F3M7 · AlphaFold monomer V2.0 prediction for oligoribonuclease (A5F3M7) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5F3M7
Elsewhere: RCSB PDB 6N6C · PDBe 6N6C · UniProt A5F3M7

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