MolNFT v2 · #158611 · protein + DNA
Ternary complex crystal structure of DNA polymerase Beta with 5-hydroxymethyl-dC (5-hmC) at the templating position
6N2T: “Ternary complex crystal structure of DNA polymerase Beta with 5-hydroxymethyl-dC (5-hmC) at the templating…”. X-ray diffraction at 2.6, 3 ligands (1GC, MG, NA). MolNFT v2 #158611 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6N2T
- Type
- protein + DNA
- Length
- 357 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.6
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- P06746
- Ligands
- 1GC, MG, NA
Structure
x-ray diffraction · resolution 2.6 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 326 | — | P06746 |
| T | — | dna | 16 | — | — |
| P | — | dna | 10 | — | — |
| D | — | dna | 5 | — | — |
Ligands and binding sites
- 1GC · 2'-deoxy-5'-O-[(R)-hydroxy{[(s)-hydroxy(phosphonooxy) phosphoryl]methyl}phosphoryl]guanosine · ligand · chains A, T, P
- MG · Magnesium ion · metal · 2 copies · chains A, P
- NA · Sodium ion · metal · 2 copies · chains A, P, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6N2T · Ternary complex crystal structure of DNA polymerase beta with 5- hydroxymethyl-dc (5-hmc)… · the same entry in another collection · chain A against A, TM-score 1.00
- P06746 · AlphaFold monomer V2.0 prediction for DNA polymerase beta (P06746) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06746
- Elsewhere: RCSB PDB 6N2T · PDBe 6N2T · UniProt P06746
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